PVEN Participant

Current Activities---Selected Citations

Below, you will find selected references describing current research by PVEN participants.

Abubakar, Z., Ali, F., Pinel, A., Traoré, O., N'Guessan, P., Notteghem, J.L., Kimmins, F., Konate, G. and Fargette, D., 2003. Phylogeography of Rice yellow mottle virus in Africa. Journal of General Virology 84, 733-43.

Alexander, H.M., 2009. Diseases in natural plant populations, communities, and ecosystems: insights into ecological and evolutionary processes. Plant Disease.

Alexander, H.M., Price, S., Houser, R., Finch, D. and Tourtellot, M., 2007. Is there reduction in disease and predispersal seed predation at the border of a host plant's range? - field and herbarium studies of Carex blanda. Journal of Ecology 95, 446-457.

Ali, A. and Randles, J.W., 1997. Early season survey of pea viruses in Pakistan and the detection of two new pathotypes of pea seedborne mosaic potyvirus 81, 343-347.

Ali, A., Li, H., Schneider, W.L., Sherman, D.J., Gray, S., Smith, D. and Roossinck, M.J., 2006. Analysis of genetic bottlenecks during horizontal transmission of Cucumber mosaic virus [electronic resource] 80, 8345-8350.

Ali, A., Reddall, A., Roberts, J., Wilson, L.J. and Rezaian, M.A., 2007. Cytopathology, mode of aphid transmission, and search for the causal agent of Cotton bunchy top dissease. Journal of Phytopathology 155, 220-227.

Ali, A. and Roossinck, M.J., 2007. Rapid and efficient purificaton of Cowpea chlorotic mottle virus by sucrose cushion ultracentrifugation. Journal of Virological Methods 141, 84-86.

Ali, A. and Roossinck, M.J., 2008. A simple technique for separation of Cowpea chlorotic mottle virus from Cucumber mosaic virus in natural mixed infections. J Virol Methods 153, 163-167.

Ali, A. and Roossinck, M.J., 2008. Genetic Bottlenecks. In: M.J. Roossinck (Ed), Plant Virus Evolution, Springer, pp. 123-131.

Bachand, G.D., and Castello, J.D. 2001. Immunolocalization of tomato mosaic tobamovirus in roots of red spruce seedlings. J. Phytopathology 149: 415-419.

BOBEN, Jana, KRAMBERGER, Petra, PETROVI?, Natasa, CANKAR, Katarina, PETERKA, Matjaz, STANCAR, Ales, RAVNIKAR, Maja. Detection and quantification of Tomato mosaic virus in irrigation waters. Eur. j. plant pathol., 2007, vol. 118, p. 59-71.

Bonnet, J., Fraile, A., Sacristán, S., Malpica, J.M. and Garcia-Arenal, F., 2005. Role of recombination in the evolution of natural populations of Cucumber mosaic virus, a tripartite RNA plant virus. Virology 332, 359-368.

Castello, J.D., and Rogers, S.O. (eds.). 2005. Life in Ancient Ice. Princeton University Press, Princeton, NJ. 307 p. (including five chapters by JDC).

Castello, J.D., Rogers, S.O., Bachand, G.D., Fillhart, R.C., Murray, J.S., Weidemann, K., Bachand, M., and Almond, M.A. 2000. Detection and partial characterization of Tenuiviruses from black spruce. Plant Dis. 84: 143-147.

Castello, J.D., Rogers, S.O., Starmer, W.T., Catranis, C.M., Ma, L., Bachand, G.D., Zhao, Y., and Smith, J.E. 1999. Detection of tomato mosaic tobamovirus RNA in ancient glacial ice. Polar Biology 22: 207-212.

Cooper, I. and Jones, R.A.C., 2006. Wild plants and viruses: under-investigated ecosystems. Advances in Virus Research 67, 1-47.

Davis, L.T. & Guy, P.L. Introduced plant viruses and the invasion of a native grass flora. Biological Invasions 3: 89-95. 2001.

Dietzgen, R.G., Callaghan, B., Wetzel, T. and Dale, J.L., 2006. Completion of the genome sequence of Lettuce necrotic yellows virus, type species of the genus Cytorhabdovirus. Virus Research 118, 16-22.

Dietzgen R.G., Callaghan B., Campbell P.R., 2007. Biology and genomics of Lettuce necrotic yellows virus<. Plant Viruses 1: 85-92.

Eigenbrode, S.D., Ding, H., Shiel, P. and Berger, P.H., 2002. Volatiles from potato plants infected with Potato leafroll virus attract and arrest the virus vector, Myzus persicae (Homoptera: Aphididae). Proceedings of the Royal Society of London. Series B, Biological sciences 269, 455-460.

Escriu, F., Fraile, A., García-Arenal, F.. 2003. The evolution of virulence in a plant virus. Evolution 57, 755-765.

Fargette, D., Konate, G., Fauquet, C., Muller, E., Peterschmitt, M. and Thresh, J.M., 2006. Molecular ecology and emergence of tropical plant viruses. Annual Review of Phytopathology 44, 235-260.

Fargette, D., Pinel, A., Abubakar, Z., Traor&eou;, O., Brugidou, C., Fatogoma, S., Hebrard, E., Choisy, M., Sere, Y., Fauquet, C. and Konate, G., 2004. Inferring the evolutionary history of Rice yellow mottle virus from genomic, phylogenetic, and phylogeographic studies. Journal of Virology 78, 3252-3261.

Fereres, A., A. Moreno. 2009. Behavioural aspects influencing plant virus transmission by homopteran insects. Virus Research 141: 158-168.

Fereres, A., Kampmeier, G.E. and Irwin, M.E., 1999. Aphid attraction and preference for soybean and pepper plants infected with potyviridae. Annals of the Entomological Society of America 92, 542-548.

Fernandez-Quintanilla, C., A. Fereres, L. Godfrey and R. F. Norris. 2002. Development and reproduction of Myzus persicae and Aphis fabae (Hom., Aphididae) on selected weed species surrounding sugar beet fields. Journal of Applied Entomology 126: 198-202.

Garcia-Arenal, F., Fraile, A. and Malpica, J.M., 2001. Variability and genetic structure of plant virus populations. Annual Review of Phytopathology, 157-186.

Garrett, K.A., Dendy, S.P., Power, A.G., Blaisdell, G.K., Alexander, H.M. and McCarron, J.K., 2004. Barley yellow dwarf luteovirus (BYDV) in natural populations of dominant tallgrass prarie species. Plant Disease 88, 574.

GUTIERREZ-AGUIRRE, Ion, BANJAC, Marko, STEYER, Andrej, POLJAK-PRIJATELJ, Mateja, PETERKA, Matjal, TRANCAR, Ales, RAVNIKAR, Maja. Concentrating rotaviruses from water samples using monolithic chromatographic supports. J. chromatogr., 2009, vol. 1216, no. 13, p. 2700-2704.

GUTIERREZ-AGUIRRE, Ion, MEHLE, Nataia, DELIA, Duka, GRUDEN, Kristina, MUMFORD, Rick, RAVNIKAR, MajaReal-time quantitative PCR based sensitive detection and genotype discrimination of Pepino mosaic virus. J. virol. methods. [Print ed.], 2009, 9 p., [in press].

GUTIERREZ-AGUIRRE, Ion, STEYER, Andrej, BOBEN, Jana, GRUDEN, Kristina, POLJSAK-PRIJATELJ, Mateja, RAVNIKAR, Maja. Sensitive detection of multiple rotavirus genotypes with a single reverse transcription-real-time quantitative PCR assay. J. Clin. Microbiol., 2008, vol. 46, no. 8, p. 2547-2554.

Guy PL. New Zealand Grasslands revisited: identification of Cocksfoot mild mosaic virus. Australasian Plant Pathology 35: ?-??. In Press till Aug 2006.

Hu, X., Meacham, T., Ewing, L., Gray, S.M., and Karasev, A.V. A novel recombinant strain of Potato virus Y suggests a new viral genetic determinant of vein necrosis in tobacco. Virus Res. 143: 68-76, 2009.

Jackson, A.O., Dietzgen, R.G., Fang, R.X., Goodin, M.M., Hogenhout, S.A., Deng, M. and Bragg, J., 2008. Plant rhabdoviruses. In: D. Mahy and M.v. Regenmortel (Eds), Encyclopedia of Virology, Elsiver, Oxford, pp. 187-196.

Jiménez-Martínez, E.S. and N.A. Bosque-Pérez. 2004. Variation in Barley yellow dwarf virus transmission efficiency by Rhopalosiphum padi after acquisition on transgenic and nontransformed wheat genotypes. J. Econ. Entomol. 97: 1790-1796.

Jiménez-Martínez, E.S. and N.A. Bosque-Pérez. 2009. Life history of the bird cherry-oat aphid, Rhopalosiphum padi on transgenic and non-transformed wheat challenged with Wheat streak mosaic virus. Entomol. Exp. Applic. (In Press).

Jiménez-Martinez, E.S., Bosque-Pérez, N.A., Berger, P.H., Zemetra, R., Ding, H.J. and Eigenbrode, S.D., 2004. Volatile cues influence the response of Rhopalosiphum padi (Homoptera : Aphididae) to barley yellow dwarf virus-infected transgenic and untransformed wheat. Environmental Entomology 33, 1207-1216.

Jiménez-Martínez, E.S. and N.A. Bosque-Pérez, P.H. Berger, and R.S. Zemetra. 2004. Life history of the bird cherry-oat aphid, Rhopalosiphum padi on transgenic and untransformed wheat challenged with Barley yellow dwarf virus. J. Econ. Entomol. 97: 203-212.

Jones, R.A.C., 2006. Control of plant virus diseases. Advances in Virus Research.

Karasev, A.V., Gray, S.M., Olsen, N., Nolte, P., Meacham, T., Hu, X. and Whitworth, J., 2008a. Identification of Potato virus Y strains associated with tuber damage during a recent virus outbreak in potato in Idaho [electronic resource] 92, 1371.

Karasev, A.V., Meacham, T., Hu, X., Whitworth, J., Gray, S.M., Olsen, N. and Nolte, P., 2008b. Outbreak of tuber necrotic PVY in commercial potato fields in Idaho, Abstracts of the 2008 Annual Meeting of th American Society for Virology, Ithaca, NY.

Karasev, A.V., Nikolaeva, O.V., Hu, X., Sielaff, Z., Whitworth, J., Lorenzen, J. and Gray, S.M., 2009. Serological properties of ordinary and necrotic isolates of Potato virus Y: a case study of PVYN misidentificaion. American Journal of Potato Research 86.

KOGOVSEK, Polona, GOW, Lisa, POMPE NOVAK, Marusa, GRUDEN, Kristina, FOSTER, Gary D., BOONHAM, Neil, RAVNIKAR, Maja. Single-step RT real-time PCR for sensitive detection and discrimination of potato virus Y isolates. J. virol. Methods. , 2008, vol.149, no. 1, p. 1-11

KRAMBERGER, Petra, PETERKA, Matjaz, BOBEN, Jana, RAVNIKAR, Maja, STRANCAR, Ales. Short monolithic columns - a breakthrough in purification and fast quantification of tomato mosaic virus. J. chromatogr., 2007, issue 1, vol. 1144, p. 143-149.

KRAMBERGER, Petra, PETROVIÂ, Natasa, STRANCAR, Ales, RAVNIKAR, Maja. Concentration of plant viruses using monolithic chromatographic supports. J. virol. methods., 2004, vol. 120, p. 51-57.

Kuzmin, I.V., Novella, I.S., Dietzgen, R.G., Padhi, A. and Rupprecht, C.E., 2009. The rhabdoviruses: biodiversity, phylogenetics, and evolution. Infection, Genetics, and Evolution 9, 541-553.

Malmström, C.M. and Field, C.B., 1997. Virus-induced differences in the response of oat plants to elevated carbon dioxide. Plant, Cell and Environment 20, 178-188.

Malmström, C.M., Hughes, C.C., Newton, L.A. and Stoner, C.J., 2005a. Virus infection in remnant native bunchgrasses from invaded California grasslands. New Phytologist 168, 217-230.

Malmström, C.M., McCullough, A.J., Johnson, H.A., Newton, L.A. and Borer, E.T., 2005b. Invasive annual grasses indirectly increase virus incidence in California native perennial bunchgrasses. Oecologia 145, 153-164.

Malmström, C.M. and Shu, R., 2004. Multiplexed RT-PCR for streamlined detection and separation of barley and cereal yellow dwarf viruses. Journal of Virological Methods 120, 69-78.

Malmström, C.M., Stoner, C.J., Brandenburg, S. and Newton, L.A., 2006. Virus infection and grazing exert counteracting influences on survivorship of native bunchgrass seedlings competing with invasive exotics. Journal of Ecology 94, 264-275.

Malpica, J.M., Fraile, A., Moreno, I., Obies, C.I., Drake, J.W. and Garcia-Arenal, F., 2002. The rate and character of spontaneous mutation in an RNA virus 162, 1505-1511.

Medina-Ortega, K.J., Bosque-Pérez, N.A., Ngumbi, E., Jimenez-Martínez, E.S. and Eigenbrode, S.D., 2009. Rhopalosiphum padi (Hemiptera: Aphididae) responses to volatile cues from Barley yellow dwarf virus-infected wheat. Environmental Entomology 38, 836-845.

Melcher, U., Muthukumar, V., Wiley, G.B., Min, B.E., Palmer, M.W., Verchot-Lubicz, J., Ali, A., Nelson, R.S., Roe, B.A., Thapa, V. and Pierce, M.L., 2008. Evidence for novel viruses by analysis of nucleic acids in virus-like particle fractions from Ambrosia psilostachya. Journal of Virology Methods 152, 49-55.

Mitchell, C.E. and Power, A.G., 2003. Release of invasive plants from fungal and viral pathogens. Nature 421, 625-627.

Mitchell, C.E. and Power, A.G.. 2006. Disease dynamics in plant communities. In: S.K. Collinge and C. Ray (Eds), Disease Ecology: Comunity structure and pathogen dynamics, Oxford University Press, Oxford, pp. 58-72.

Mitchell, C.E., Reich, P.B., Tilman, D. and Groth, J.V., 2003. Effects of elevated CO₂, nitrogen, deposition, and decreased speies diversity on foliar fungal plant disease. Global Change Biology 9, 438-451.

Mitchell, C.E., Tilman, D. and Groth, J.V., 2002. Effects of grassland species diversity, abundane, and composition on foliar disease. Ecology 83, 1713-1726.

Moreno, A., Blas, C.d., Biurrun, R., Nebreda, M., Palacios, I., Duque, M. and Fereres, A., 2004. The incidence and distribution of viruses infecting lettuce, cultivated Brassica and associated natural vegetation in Spain 144, 339-346.

Moreno, A., Nebreda, M., Diaz, B.M., Garcia, M., Salas, F. and Fereres, A., 2007. Temporal and spatial spread of Lettuce mosaic virus in lettuce crops in central Spain: factors involved in Lettuce mosaic virus epidemics [electronic resource] 150, 351-360.

N'Guessan, P., Pinel, A., Sy, A.A., Ghesquiere, A. and Fargette, D., 2001. Distribution, pathogenicity, and interactions of two strains of Rice yellow mottle virus in forested and savanna zones of West Africa. Plant Disease 85, 59-64.

Nebreda, M., Moreno, A., Pereze, N., Palacios, I., Seco-Fernandez, V. and Fereres, A., 2004. Activity of aphids associated with lettuce and broccoli in Spain and their efficiency as vectors of Lettuce mosaic virus. Virus Research 100, 83-88.

Newcombe, G., Shipunov, A., Eigenbrode, S.D., Raghavendra, A.K.H., Ding, H., Anderson, C.L., Menjivar, R., Crawford, R. and Schwarzlander, M., 2009. Endophytes influence protection and growth of an invasive plant. Communicative and Integrative Biology 2, 249-251.

Ngumbi, E., Eigenbrode, S.D., Bosque-Pérez, N.A., Ding, H. and Rodriguez, A., 2007. Myzus persicae is arrested more by blends than by individual compounds elevated in headspace of PLRV-Infected potato. Journal of Chemical Ecology 33, 1733-1747.

Osman, N.A., A/Rahman, M.E., Ali, A.S. and Fadol, M.A., 2008. Rapid detection of Peste des Petits Ruminants (PPR) virus antigen in Sudan by agar gel precipitation (AGPT) and haemagglutination (HA) Tests [electronic resource] 40, 363-368.

Pearson MN, Clover GRG, Guy PL, Fletcher JD, Beever RE. A review of the plant viruses and mollicute records for New Zealand. Australasian Plant Pathology 35: 217-252 2006.

Power, A.G. and Mitchell C.E., 2004. Pathogen spillover in disease epidemics. The American Naturalist 164 Suppl 5, S79-89.

Rogers, S.O., and Castello, J.D. 2005. Enigmas and Aliens Encased in Ice. Princeton University Press, Princeton, NJ. (in review).

Rogers, S.O., Starmer, W.T., and Castello, J.D. 2004. Recycling of pathogenic microbes through survival in ice. Med. Hypotheses 63: 773-777.

Sacristán, S., Fraile, A. and Garcia-Arenal, F., 2004. Population dynamics of Cucumber mosaic virus in melon crops and in weeds in central Spain. Phytopathology 94, 992-998.

Sacristán, S., Fraile, A., Malpica, J.M. and Garcia-Arenal, F., 2005. An analysis of host adaptation and its relationship with virulence in Cucumber mosaic virus. Phytopathology 95, 827-833.

Sarcristán, S., Malpica, J.M., Fraile, A., García-Arenal, F. 2003. Estimation of population bottlenecks during systemic movement of Tobacco mosaic virus in tobacco plants. J. Virol., 77:9906-9911.

Smith, A.W., Skilling, D.E., Castello, J.D., and Rogers, S.O. 2004. Ice as a reservoir for pathogenic human viruses: specifically caliciviruses, influenza viruses, and enteroviruses. Med. Hypotheses 63: 560-566.

Sorho, F., Pinel, A., Traoré, O., Bersoult, A., Ghesquiere, A., Hebrard, E., Konate, G., Sere, Y. and Fargette, D., 2005. Durability of natural and transgenic resistances in rice to Rice yellow mottle virus 112, 349-359.

Srinivasan, R., Alvarez, J.M., Bosque-Pérez, N.A., Eigenbrode, S.D. and Novy, R.G., 2008. Effect of an alternate weed host, hairy nightshade, Solanum sarrachoides, on the biology of the two most important Potato leafroll virus (Luteoviridae: Polerovirus) vectors, Myzus persicae and Macrosiphum euphorbiae (Aphididae: Homoptera). Environmental Entomology 37, 592-600.

Srinivasan, R., Alvarez, J.M., Eigenbrode, S.D. and Bosque-Pérez, N.A., 2006. Influence of hairy nightshade Solanum sarrachoides (Sendtner) and Potato leafroll virus (Luteoviridae: Polerovirus) on the host preference of Myzus persicae (Sulzer) (Homoptera: Aphididae) [electronic resource]. Environmental Entomology 35, 546-553.

Traoré, O., M., T., Fargette, D. and Konate, G., 2006. Rice seedbed as a source of primary infection by Rice yellow mottle virus European Journal of plant Pathology.

Traoré, O., Pinel, A., Hebrard, E., Gumedzoe, M.Y.D., Fargette, D., Traoré, A.S. and Konate, G., 2006. Occurrence of resistance-breaking isolates of Rice yellow mottle virus in West and Central Africa. Plant Disease 90, 259-263.

Traoré, O., Sorho, F., Pinel, A., Abubakar, Z., Banwo, O., Maley, J., Hebrard, E., Winter, S., Sere, Y., Konate, G. and Fargette, D., 2005. Processes of diversification and dispersion of Rice yellow mottle virus inferred from large-scale and high-resolution phylogeographical studies. Molecular Ecology 14, 2097-2110.

Tsai, C.W., McGraw, E.A., Ammar, E.D., Dietzgen, R.G. and Hogenhout, S.A., 2008. Drosophila melanogaster mounts a unique immune response to the rhabdovirus sigma virus. Applied and Environmental Microbiology 74, 3251-3256.

Uzest, M., Gargani, D., Drucker, M., Hebrard, E., Garzo, E., Candresse, T., Fereres, A. and Blanc, S., 2007. A protein key to plant virus transmission at the tip of the insect vector stylet. Proceedings of the National Academy of Sciences 13, 17959-17964.

Werner, B.J., Mowry, T.M., Bosque-Pérez, N.A., Ding, H. and Eigenbrode, S.D., 2009. Changes in green peach aphid responses to Potato leafroll virus-induced volatiles emitted during disease progression. Environmental Entomology.

Whitfield, A.E., German, T.L., Tsai, C.W., Redinbaugh, M.G. and Hogenhout, S.A.&l, 2006. Expression of the Maize mosaic virus glycoprotein in insect cells. Phytopathology 96.

Whitfield, A.E., Ullman, D.E. and German, T.L., 2004. Expression and characterization of a soluble form of Tomato spotted wilt virus glycoprotein GN. Journal of Virology 78, 13197-13206.

Whitfield, A.E., Ullman, D.E. and German, T.L., 2005. Tospovirus-thrips interactions. Annual Review of Phytopathology 43, 459-489.